News and Events

Why Laser Optics Matter in Flow Cytometry: Precision Coatings for High-Sensitivity Biological Analysis

Written by Torrent Photonics | Mar 24, 2026

In just a few years, flow cytometry panels have jumped from 18-25 colors to beyond 40, making multicolor detection and specification of the optics system even more complex. With a standard 12-fluorophore flow cytometer often hosting over 40 optical filters, the number of components in the optical train scales accordingly, and each component – and optical coating – needs to be designed to optimize signal integrity.

The Optics System: Where Coated Surfaces Sit

In immunophenotyping, oncology diagnostics and life sciences research, the difference between resolving a rare cell population and missing it can come down to the optical coatings used within a flow cytometer.

Across several distinct stages in the light path, each optic must be specified appropriately – from excitation and beam shape to fluorescence separation:

  • The excitation path: Steering mirrors guide the beam, while laser clean-up filters remove unwanted wavelengths from the source. Separately, cylindrical lenses help form the excitation spot into a rectangular cross-section at the flow cell interrogation point.
  • The collection path: Mounted at 90º to the laser axis, a collection lens gathers fluorescent light signals and side scatter, and an obscuration bar is placed to block direct laser light from forward scatter. 
  • The emission path: At this stage, dichroic filters split the collected light by emission wavelength, and each channel terminates with a bandpass filter in front of photomultiplier tubes (PMTs) or avalanche photodiodes (APDs).

Coating Parameters That Determine Sensitivity

Three coating parameters directly govern flow cytometry detector sensitivity: reflectivity, wavelength selectivity and environmental stability.

Reflectivity

Steering mirrors demand reflectivity above 99% at the operating wavelength. For every fraction of a percentage lost at the mirror surface, less excitation power reaches the fluorescently labeled cells, resulting in weaker fluorescence signals at the optical detector. If working with multiple mirrors in flow cytometry, this loss multiplies along the beam path.

Wavelength Selectivity

To avoid overlap between adjacent fluorophore labels, dichroic mirrors require sharp spectral transitions; the sharper the edge, the lower the spillover across fluorescence channels. When edges aren’t steep enough, fluorescent emissions from neighboring fluorophores can create crosstalk, resulting in signal bleed. 

Typically, emission optical filters need to block the laser line to OD5 (99.999% attenuation) or higher to prevent excitation scatter from interfering with the fluorescence signal.

In order to capture as many photons as possible, bandpass filter transmission should be above 90% at the center wavelength.

Environmental Stability

Porous coatings can absorb moisture from the air, which, in turn, alters their spectral position. This is of particular concern in clinical or cleanroom environments where flow cytometers run continuously, and coatings that shift with temperature and humidity are unacceptable. To counter this, dense films are applied – such as dielectric coatings produced by ion beam sputtering (IBS) – that are non-porous and exhibit minimal thermal shift, less than 0.5 pm/ºC. 

Fabrication & Quality

Delivering flow cytometry coating specifications consistently – and for biomedical-grade applications – requires controlled fabrication, in-house metrology capabilities and the right technologies. 

At Torrent Photonics, we manufacture laser optics - including optical filters and dichroic mirrors - for flow cytometry applications using IAD, magnetron sputtering, and IBS coating methods. These techinques produce dense, low-absorption films that improve signtal-to-noise and crosstalk suppression, and are explored further in our guide to advanced laser optics.

Additionally, we fabricate micrpatterened optical filters for multi-channel detector configurations. With spectral flow cytometers driving more demand for compact, high-density arrays, we expect these filters to become particularly relevant to the cytometry field.

All coating is carried out in our Class 100 and Class 1000 cleanrooms – where particulate contamination would otherwise become embedded scatter sites – and validated through interferometry and spectrophotometry before shipping.

To discuss your flow cytometer optical path requirements or request a custom coating quote, contact our engineering team.